The BioProcess Engineering Blog

Practical guides, calculation walkthroughs, and scale-up tips from the bench to the bioreactor. Written for working scientists.

Cell Culture

How to Troubleshoot Contamination in Cell Culture: Identification & Prevention

Systematic guide to identifying bacterial, mycoplasma, and fungal contamination. Decision tree, PCR detection protocols, BSC airflow principles, and decontamination strategies with worked examples.

13 min read April 2026
Contamination Mycoplasma Cell Culture
Engineering

Precision Fermentation Economics: Can You Compete at $25/kg?

Full cost breakdown of precision fermentation at commercial scale. COGS/kg benchmarks from 100 L to 200,000 L, breakeven analysis vs animal agriculture, and strategies for reaching price parity.

14 min read April 2026
Precision Fermentation Economics Scale-Up
Emerging

How to Optimize HEK293 Transient Transfection for Viral Vector Production

Optimize PEI:DNA ratio, cell density, temperature shift, and harvest timing for AAV and lentiviral vector manufacturing. Includes worked examples, titer benchmarks, and bioreactor scale-up protocols.

16 min read April 2026
HEK293 Transfection Gene Therapy
QC / Analytics

FDA Process Validation for Biologics: The Complete Guide (Stages 1-3)

Master the three-stage FDA process validation lifecycle for biologics. Covers CPP-to-CQA mapping, PPQ batch design with statistical acceptance criteria, and continued process verification with control charts.

20 min read April 2026
Process Validation FDA/EMA PPQ
Upstream

How to Calculate and Optimize Specific Growth Rate (μ) in Fermentation

Calculate specific growth rate from batch data, understand Monod kinetics, and control μ in fed-batch fermentation with worked examples and organism comparison data.

16 min read April 2026
Growth Kinetics Monod Fed-Batch
Engineering

How to Design a DOE for Bioprocess Optimization (Step-by-Step)

Master design of experiments for bioprocessing: screening designs, response surface methodology, definitive screening designs, and model validation with worked E. coli fed-batch examples.

18 min read April 2026
DOE Optimization RSM
Emerging

How to Optimize AAV Production Yield in HEK293 Cells

Data-driven strategies for maximizing AAV titer: transfection optimization, serotype-specific harvest timing, full/empty capsid separation, small molecule boosters, and bioreactor scale-up to 2000 L.

16 min read April 2026
AAV Gene Therapy HEK293
Upstream

How to Calculate kLa for Any Bioreactor: Complete Guide

Step-by-step kLa determination using dynamic gassing-out, sulfite oxidation, and Van't Riet correlations. Includes worked examples for stirred-tank and shake flask systems.

12 min read March 2026
kLa OTR Van't Riet
Upstream

Fed-Batch Feeding Strategies Explained: Exponential, Linear & Monod Kinetics

Compare exponential, linear, and DO-stat feeding profiles. Learn when each strategy works best and how to calculate feed rates from kinetic parameters.

15 min read March 2026
Fed-Batch Feeding Monod
Scale-Up

5 Bioreactor Scale-Up Criteria Compared: Which One Should You Use?

Constant P/V, tip speed, kLa, Re, and mixing time -- when to use each criterion, what breaks at scale, and how to choose for your specific process.

10 min read March 2026
P/V Tip Speed kLa Re
Cell Culture

CHO Cell Culture Troubleshooting: A Systematic Guide

Diagnose viability drops, high lactate, low titer, and slow growth in CHO cultures. Decision trees and corrective actions for the most common failure modes.

14 min read March 2026
CHO Viability Lactate
Downstream

Protein A Resin Lifetime: How to Track DBC Decay and Optimize Replacement

Monitor dynamic binding capacity over cycles, predict resin replacement timing, and optimize CIP protocols to extend Protein A lifetime and reduce purification costs.

8 min read March 2026
Protein A DBC CIP
QC

Endotoxin Testing for Biologics: MVD Calculation & Dilution Series Guide

Calculate maximum valid dilution, set up dilution series for LAL assays, and interpret results per USP <85>. Includes spike recovery validation and common pitfalls.

9 min read March 2026
LAL MVD USP 85
Emerging

mRNA Manufacturing: Calculating End-to-End Process Yield from IVT to LNP

Model the complete mRNA manufacturing waterfall: IVT transcription yield, purification losses, LNP encapsulation efficiency, and final doses per batch at each scale.

11 min read March 2026
mRNA IVT LNP
Engineering

Bioreactor Heat Transfer: Why Cooling Becomes the Bottleneck at Scale

Understand the surface-area-to-volume problem, calculate heat generation from OUR, size jacket and coil systems using LMTD, and design for large-scale thermal management.

10 min read March 2026
Heat Transfer LMTD Jacket
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